PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan015529 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | Whirly | ||||||||
Protein Properties | Length: 187aa MW: 20704.5 Da PI: 10.666 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 95.9 | 4.3e-30 | 116 | 186 | 1 | 71 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlask 71 s+yk+kaal+v+++ p+f ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+te++++++l+++ Aan015529 116 SIYKGKAALTVEPRPPEFAPLDSGAFKLTKEGFILLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAR 186 7*******************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 3.2E-34 | 106 | 186 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 6.2E-30 | 109 | 185 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 6.1E-28 | 117 | 186 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
XKNSLPSSKN RVVEGFIKIL LLPSSQRGQA NIFTLTVTGE QLKMLNLSIP STPKSFITQN 60 PKSPFICLNP QSIKFINTKT STKHILKCQY SDQQQQRPDV SSYSQPQAPK VFIGHSIYKG 120 KAALTVEPRP PEFAPLDSGA FKLTKEGFIL LQFAPAAGVR QYDWSRKQVF SLSVTEIGSI 180 ISLGARX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 2e-43 | 109 | 186 | 36 | 113 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 2e-43 | 109 | 186 | 36 | 113 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 2e-43 | 109 | 186 | 36 | 113 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 2e-43 | 109 | 186 | 36 | 113 | p24: plant transcriptional regulator PBF-2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.18435 | 1e-147 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022011838.1 | 3e-76 | single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9LL85 | 9e-44 | WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A251SC53 | 6e-75 | A0A251SC53_HELAN; Putative ssDNA-binding transcriptional regulator | ||||
STRING | XP_002520128.1 | 2e-46 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02740.1 | 2e-44 | ssDNA-binding transcriptional regulator |