PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan015172
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GATA
Protein Properties Length: 301aa    MW: 32422.8 Da    PI: 7.1016
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55180353PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-263160993PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.62.7e-16212248135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Aan015172 212 CRHCGISSksTPMMRRGPSGPRTLCNACGLKWANKGV 248
                *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.84677112IPR010399Tify domain
SMARTSM009791.4E-1177112IPR010399Tify domain
PfamPF062002.0E-1281111IPR010399Tify domain
PROSITE profilePS5101713.344144186IPR010402CCT domain
PfamPF062034.4E-16144186IPR010402CCT domain
SMARTSM004011.5E-12206259IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.827206252IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-12207256No hitNo description
Gene3DG3DSA:3.30.50.104.5E-15211253IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.9E-14212248IPR000679Zinc finger, GATA-type
CDDcd002024.95E-15212259No hitNo description
PROSITE patternPS003440212239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
DDVAAGEEES IDNPQIRYNN NHHNHHHHLN NNNNSNQQMQ GHGHGHGGGG MEEMGVNQHA  60
LYVPENEIQP VNSGAGANGG ADQLTLSFQG EVYVFDAVSP EKVQAVLLLL GGYEVPTGAP  120
TLGIPPQNQR ALNEFPARSS QPQRAASLIR FREKRKERCF DKKIRYSVRK EVALRMQRKK  180
GQFTSSKAIN DEAGAGASDW NGGNGQDEET LCRHCGISSK STPMMRRGPS GPRTLCNACG  240
LKWANKGVLR DLNKVSASGA LDPTGKTIEQ SDGEPNDNNA VNVNAIIVSN GGDTSAVGVE  300
R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.61500.0trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022015653.11e-161GATA transcription factor 24-like
RefseqXP_024979613.11e-161GATA transcription factor 24-like
SwissprotQ8GXL72e-85GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2U1NY420.0A0A2U1NY42_ARTAN; CCT domain-containing protein
STRINGXP_009609389.11e-121(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-87ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]