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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Aan015138 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 226aa MW: 25586.6 Da PI: 6.7228 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 66.9 | 3.6e-21 | 163 | 217 | 1 | 55 |
G2-like 1 kprlrWtpeLHer.FveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ e ++ ++ v+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Aan015138 163 KPRVVWSVEXPSAvLLQPVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 217
79*****9997652789*****.********************************8 PP
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| 2 | Response_reg | 63.6 | 9.7e-22 | 3 | 96 | 16 | 109 |
HHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
Response_reg 16 qalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
++l++ +y ev+ + +e al l+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a ++++ + + + Ga d+l Kp+ +e+l++
Aan015138 3 KMLRNCNY-EVTKCNRAEVALSHLRENKngFDVVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKNVVMKGVTHGACDYLIKPVRIEALRN 96
67888899.***************999999**********************6654.8***********************************987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 8.5E-126 | 1 | 226 | IPR017053 | Response regulator B-type, plant |
| SMART | SM00448 | 1.2E-12 | 1 | 98 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 34.794 | 1 | 102 | IPR001789 | Signal transduction response regulator, receiver domain |
| Gene3D | G3DSA:3.40.50.2300 | 1.2E-34 | 2 | 121 | No hit | No description |
| CDD | cd00156 | 3.38E-22 | 2 | 101 | No hit | No description |
| SuperFamily | SSF52172 | 2.28E-28 | 2 | 109 | IPR011006 | CheY-like superfamily |
| Pfam | PF00072 | 9.8E-19 | 3 | 96 | IPR001789 | Signal transduction response regulator, receiver domain |
| SuperFamily | SSF46689 | 1.08E-14 | 161 | 221 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 162 | 222 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 8.5E-19 | 163 | 217 | IPR006447 | Myb domain, plants |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 226 aa Download sequence Send to blast |
XEKMLRNCNY EVTKCNRAEV ALSHLRENKN GFDVVISDVH MPDMDGFKLL EHIGLEMDLP 60 VIMMSADDSK NVVMKGVTHG ACDYLIKPVR IEALRNIWQH VVRKKKHEWK EVEPSPSADE 120 QKPPEEPDYS SSANEGHNGK TQKGGKNEDD DADDRDDSSS LKKPRVVWSV EXPSAVLLQP 180 VNQLGIDKAV PKKILELMNV PGLTRENVAS HLQKYRLYLR RLSGSQ |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 3e-17 | 159 | 223 | 1 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023766807.1 | 1e-133 | two-component response regulator ARR2-like isoform X3 | ||||
| Swissprot | Q9ZWJ9 | 1e-105 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
| TrEMBL | A0A2U1Q658 | 1e-133 | A0A2U1Q658_ARTAN; Two-component response regulator | ||||
| STRING | XP_009591694.1 | 1e-116 | (Nicotiana tomentosiformis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G16857.1 | 4e-99 | response regulator 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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