PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan014865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | C3H | ||||||||
Protein Properties | Length: 236aa MW: 25381.4 Da PI: 8.5799 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.4 | 1.9e-06 | 58 | 70 | 15 | 27 |
-TTTTT-SS-SSS CS zf-CCCH 15 CkyGdrCkFaHgp 27 C +Gd+C+FaH++ Aan014865 58 CTFGDKCRFAHSE 70 ***********95 PP | |||||||
2 | zf-CCCH | 36.4 | 8.8e-12 | 206 | 230 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C++f++ G+C +GdrC+FaHg+ Aan014865 206 KTKMCDNFLK-GQCTFGDRCHFAHGE 230 899*******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 8.77E-7 | 43 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.774 | 43 | 71 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-9 | 44 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.58 | 45 | 70 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 5.11E-15 | 103 | 181 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 5.1E-16 | 109 | 179 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.3E-10 | 110 | 180 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.11 | 111 | 175 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 9.3E-10 | 113 | 177 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.39E-13 | 113 | 176 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-15 | 203 | 234 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-7 | 204 | 230 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-9 | 204 | 234 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.539 | 204 | 231 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 206 | 230 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
EGCHFSHYIP GGYNAASQFT NMGGPISRKP PMQQPFTDGP ATPMKSKLCN RINTPEGCTF 60 GDKCRFAHSE AEMGGGRPSF SSYENPRGPM NFSGYQGRFE PSPAAANFGQ SATAKISIES 120 SLAGPVIGKG GINSKQICRV TGVKLHVRDH ETDPNQKNIE LEGSFDQIKE ASAMVQEIIM 180 NLGGANGGRK GGGFQQQQSG GRNNIKTKMC DNFLKGQCTF GDRCHFAHGE NELRNG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 192 | GGRKGGG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024962930.1 | 1e-108 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 8e-83 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A2U1P3S6 | 1e-172 | A0A2U1P3S6_ARTAN; K Homology domain-containing protein | ||||
STRING | XP_008805470.1 | 3e-86 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-53 | C3H family protein |