PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan014838

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

Dof

Protein Properties

Length: 179aa MW: 19832.6 Da PI: 9.8045

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-152134	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.2e-38	20	79	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s Aan014838 20 PEHLPCPRCESTNTKFCYYNNYNFSQPRHFCKGCRRYWTHGGTLRDIPVGGGSRKNAKRS 79 57899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.7E-33	22	77	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.012	23	77	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	25	61	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-23	27	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MPTLTAGVKP HFPGAPPPEP EHLPCPRCES TNTKFCYYNN YNFSQPRHFC KGCRRYWTHG 60 GTLRDIPVGG GSRKNAKRSR LSNTSTYASN NNTNVVSSSN HLEFRHMAPP TTTLLAPFGG 120 DHLRMCESFT SLLSGTTGGF FGLKRVLGEV FGLFMVLVSV VVKVVVMWWL VVVEVMSSX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012852923.1	2e-58	PREDICTED: dof zinc finger protein DOF3.4-like
Swissprot	Q9FGD6	9e-39	DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBL	A0A2U1KLJ5	8e-95	A0A2U1KLJ5_ARTAN; Dof zinc finger protein DOF3.4
STRING	Migut.H00486.1.p	8e-58	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	7e-33	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]