PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014822
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 567aa    MW: 62627.3 Da    PI: 7.246
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55046499PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-668160994PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-06246266526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C  Gd C +aHg
  Aan014822 246 PCPEFRK-GSCAKGDLCEYAHG 266
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.204.0E-1917169IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.49E-1520159IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-759132IPR020683Ankyrin repeat-containing domain
SMARTSM002480.076393IPR002110Ankyrin repeat
PROSITE profilePS5029717.87363159IPR020683Ankyrin repeat-containing domain
CDDcd002046.37E-665158No hitNo description
SMARTSM002480.2598130IPR002110Ankyrin repeat
PROSITE profilePS5008812.20998133IPR002110Ankyrin repeat
SMARTSM003563.4E-5241267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.512241268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4245267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4273305IPR000571Zinc finger, CCCH-type
SMARTSM0035658276299IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.244276300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MVEDKGQEKY HGIFSKCSKL LELAANDDVE GFASMVEEKG FSIDDTSLWY GKRNGGKGKM  60
GFEERTPLMI ASLFGSSQVL KYIISSNKVD VNKSSDSDGA AALHCAAAGG SHNGVMIVKL  120
LLEASADVNL ADIYGNKPVD LIARGLKSSK RRILEILLNG FVSDGTDVEE VEEKETVSAK  180
KEYPVDVSMP DINNGVYGSD EFRMYTFKVK PCSRAYTHDW TECPFVHPGE NARRRDLKKF  240
NYSCVPCPEF RKGSCAKGDL CEYAHGVFES WLHPAQYKTR LCKDEIGCAR KVCFFAHTRD  300
EMRPVYASTG SALPSPKSTS VPVTSVEMGS MSPLSLGAMS PPTSPMWQSN HLTPPALQLP  360
GSRLKSSLNA RDIEMDIEQQ RRQLVNDLTN NLYNNNNNNR FGELKPTNLD DMFGSLDQSL  420
FLRNSNQNQL RASYPSPNYS SSPVRNSYGF DSSAAVAQAV MNSRSGSFTK QRSQSFIDRG  480
AGLTMSPRSI PQQSCNLSEW GSPNGKLDWG FSSEDANKLR KSASFGYRGN AAAVHSSPKM  540
QTYGDTGADK LPHWIEQMYI EQEQMVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145151LKSSKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.98280.0trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748561.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE61e-180C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2J6JIF50.0A0A2J6JIF5_LACSA; Uncharacterized protein
STRINGGorai.011G289400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-164C3H family protein