PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014763
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family NF-YA
Protein Properties Length: 608aa    MW: 70062.2 Da    PI: 7.9228
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55024357PU_unrefUnigeneView CDS
gnl|UG|Aan#S55206515PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-141444PU_unrefplantGDBView CDS
PUT-183a-Artemisia_annua-623160989PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.53.9e-32123179158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR RgsgGrF
  Aan014763 123 QEPVYVNAKQYNAILRRRQSRAKAELEKKL-IKDRKPYLHESRHQHAMRRVRGSGGRF 179
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.3E-36121182IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.949122182IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-27124179IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-23125147IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860127147IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.4E-23156179IPR001289Nuclear transcription factor Y subunit A
SMARTSM006674.7E-5396428IPR006594LIS1 homology motif
PROSITE profilePS5089610.16396428IPR006594LIS1 homology motif
PfamPF085133.0E-9398424IPR006594LIS1 homology motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MAIQANSSDS SSAEQSLDRE SDSDEVVSEE EDEVSKETQA ADSYGKQQKD IQQGVPNMLA  60
SNGETLGQAS QHQLVGHSIA CAPNPYCDPY YGGMMTAYGQ PMVHPQFLEM HQARMPLPLE  120
MAQEPVYVNA KQYNAILRRR QSRAKAELEK KLIKDRKPYL HESRHQHAMR RVRGSGGRFA  180
KKTEVNSGNR ADVDKNTTAS SQSLNQTGVK RVRSESAESL DPRKETPRGN LVNSLSTRAY  240
LDEGRYENGD NYQGSGYRLH SSDRGDGGSL GQQWITMSSN QTSQRAVAMK DVMVFNGALM  300
ASSSWPANLL GFSFMGTKRS KRYMYLSVAS LLLLAYFLLF HDQRCVQSLL LGLERIGWFV  360
ISFVNVGVGG CRIYSRNCFL VFMSKISKKL TMININSQEL NYLVYRYLHE SGFTHTAFTL  420
GYEAALNKST IDGNVVPPGA LVTFVQKGIQ YLELEANLTC NDSDIDEDFS FIQPIDLITK  480
DVYELQQMIK EKKQSLQKAK NREKNKDIAN SAREHEQEHA KEREKEHARD REKEHEQEQI  540
RERERKRVHM REKEEEQERQ HIREKERKNQ MEIENNREKE KERQQRDRER ELEKEKVERD  600
RERERERX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2xtc_A1e-19393475187F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
2xtc_B1e-19393475187F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
2xte_A1e-19393475187F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
2xte_B1e-19393475187F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
2xte_C1e-19393475187F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
2xte_D1e-19393475187F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
2xte_E1e-19393475187F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
2xte_F1e-19393475187F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
2xte_G1e-19393475187F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
2xte_H1e-19393475187F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
2xte_I1e-19393475187F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
2xte_J1e-19393475187F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
2xte_K1e-19393475187F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
2xte_L1e-19393475187F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316323TKRSKRYM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.4520.0leaf
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.13e-56nuclear factor Y, subunit A9