PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014731
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family CO-like
Protein Properties Length: 424aa    MW: 47793.3 Da    PI: 4.6085
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55179639PU_unrefUnigeneView CDS
gnl|UG|Aan#S56467480PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-72856PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89e-081660341
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
               +r C+ + + +++++C  ++ +lC++C  + H+       H++v 
  Aan014731 16 ARACDSCVRRRARWYCPADDAFLCQSCDGSVHSAnqlagrHERVL 60
               578*****************************6678888888775 PP
2CCT67.92.7e-23363406144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Aan014731 363 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRE 406
                9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3811461IPR000315B-box-type zinc finger
PfamPF006431.5E-61660IPR000315B-box-type zinc finger
CDDcd000216.07E-111761No hitNo description
PROSITE profilePS5101716.083363405IPR010402CCT domain
PfamPF062035.2E-18363405IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MIAGTKTANA VGGKTARACD SCVRRRARWY CPADDAFLCQ SCDGSVHSAN QLAGRHERVL  60
LETGSSKLFG SGTVSPEPTW HKGLTRRART PRPRSKYSLK LEGKKDVVNS SAPLVPEIGV  120
LEASLLDDDD EEEELVYPLV PVFDPFEAEL CNASNEIGSG LNFIVENKQE ETCNLDELQG  180
FDLPTDDLEL LEFAADVESL LGKGFDDTSC RIDDLGLTNG YKEDDTNNIE HCFDENRVKV  240
EDKEVEAILG FDVDSTRETL DWDFGYDSTM MIEEEEKKVV VGIEEEHVMG LSSDPCNEER  300
VQKPNILLKL NYEDVINTWA DQRSPWTNGT RPELSSDGFW PDLMWTGNNN PSYGGVGGSD  360
GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRETFEK PLSTSSFPTY  420
LIKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373389RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.17570.0leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024992672.10.0zinc finger protein CONSTANS-LIKE 16-like isoform X2
SwissprotQ8RWD03e-91COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2U1MLL50.0A0A2U1MLL5_ARTAN; CONSTANTS-like protein
STRINGVIT_01s0011g03520.t011e-121(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-83B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]