PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan014622

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

CO-like

Protein Properties

Length: 348aa MW: 38674.1 Da PI: 7.1835

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-144909	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.7	1.1e-08	22	55	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgHt 38 + C+ +++ + lfC++++ +lC C +++H gHt Aan014622 22 KPCDSCKSTSAVLFCRTDKLHLCIACDVKIH-GHT 55 57****************************9.876 PP
2	zf-B_box	24	8.3e-08	60	105	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H + H++vp+ Aan014622 60 VWMCEVCEQAAASVTCKADVAALCVTCDRDIH-SvnplarrHERVPV 105 689*****9*******************.44888888999986 PP
3	CCT	70.1	5.6e-24	276	320	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+Rk++KkirY+sRKa+Ae+RpR++GrFvkq+e Aan014622 276 REARVLRYREKRKNRKYDKKIRYASRKAYAETRPRIRGRFVKQTE 320 9*****************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	6.7E-5	19	62	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.3E-6	22	58	IPR000315	B-box-type zinc finger
CDD	cd00021	1.67E-7	23	62	No hit	No description
PROSITE profile	PS50119	9.684	24	62	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.793	58	105	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.7E-6	60	105	IPR000315	B-box-type zinc finger
CDD	cd00021	1.07E-7	61	105	No hit	No description
SMART	SM00336	4.0E-9	63	105	IPR000315	B-box-type zinc finger
Pfam	PF06203	4.6E-18	276	318	IPR010402	CCT domain
PROSITE profile	PS51017	16.728	276	318	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MVENTDCGGT KSFPSRWTAI AKPCDSCKST SAVLFCRTDK LHLCIACDVK IHGHTKHERV 60 WMCEVCEQAA ASVTCKADVA ALCVTCDRDI HSVNPLARRH ERVPVVPFYD SAEDVVRLAN 120 LTAEILTQPI VSDVTCDVTT SMHVQYPLDV PQVMVKSADL FSDRLFDFGF AIPSHVLLEP 180 EYRDRVVSIQ TTTGPVMSIP PLGPPIQSVD HKPVATRTPY MMEYTSSTTN QSHSLSVSST 240 SIDEGTASEQ SSIVDVSYPL VLPAINNEKK FSAADREARV LRYREKRKNR KYDKKIRYAS 300 RKAYAETRPR IRGRFVKQTE SAGECDVDPC LFTPVCGGEV EYGVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MVENTDCGGT KSFPSRWTAI AKPCDSCKST SAVLFCRTDK LHLCIACDVK IHGHTKHERV  60
WMCEVCEQAA ASVTCKADVA ALCVTCDRDI HSVNPLARRH ERVPVVPFYD SAEDVVRLAN  120
LTAEILTQPI VSDVTCDVTT SMHVQYPLDV PQVMVKSADL FSDRLFDFGF AIPSHVLLEP  180
EYRDRVVSIQ TTTGPVMSIP PLGPPIQSVD HKPVATRTPY MMEYTSSTTN QSHSLSVSST  240
SIDEGTASEQ SSIVDVSYPL VLPAINNEKK FSAADREARV LRYREKRKNR KYDKKIRYAS  300
RKAYAETRPR IRGRFVKQTE SAGECDVDPC LFTPVCGGEV EYGVVPSF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.1517	0.0	leaf\| trichome

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023746649.1	1e-109	zinc finger protein CONSTANS-LIKE 3-like
TrEMBL	A0A2U1LWZ6	0.0	A0A2U1LWZ6_ARTAN; Zinc finger protein CONSTANS-like 5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	2e-77	CONSTANS-like 5