PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014498
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GRAS
Protein Properties Length: 313aa    MW: 34662.8 Da    PI: 7.0213
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-68053PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS238.23.6e-732031373373
       GRAS  73 nsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakf 168
                + ++ ++a+k+fs+vsPi+ fs +taNqaIl+ ++g+  vH+iDfdi+ G++W+++l+a a+++     ++p +RiT+v+++e     e + ++e+L++f
  Aan014498  20 EIVQLIKAYKIFSNVSPIPLFSSFTANQAILDVIDGSMNVHVIDFDIGLGGHWASFLKAVAEKAesrkVNSPAVRITAVVPEE--YVLESKLIKENLSSF 117
                478999*******************************************************8875444679**********66..999999********* PP

       GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysal 267
                ++elg++f+++++ ++ +e +++++ ++ +gE++aV l+  ++r              +++ ++++sP+vvv v+ e++  +++ F + +++ +e ++++
  Aan014498 118 CSELGIRFDIEFVSVRVFEFVSFKSVKFVNGEKTAVVLSPTIFRRI---------GGGFVNDLRRVSPDVVVYVDGELNGyGNALFRQTVIDGVELFTTV 208
                ************9999************************999998.........358*******************9988******************* PP

       GRAS 268 fdsleaklpres......eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                ++slea  +         e+++++E ++l ++i  +v  +g++          Wre++++aG++pv +s++a+ qa++llr+v+++g++v ++++++vl+
  Aan014498 209 MESLEAANGGGGggggggEWMRSIEMFVLLPKIIAMVEDSGRR-------GTAWREMFGRAGMRPVVMSQFAEFQAECLLRRVQVRGFHVAKRHAEMVLC 301
                ****777443334555669*********************998.......789*********************************************** PP

       GRAS 362 WkdrpLvsvSaW 373
                W+drpLv++S+W
  Aan014498 302 WHDRPLVATSVW 313
                ************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.9231294IPR005202Transcription factor GRAS
PfamPF035141.3E-7020313IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
XDPNTAYWLT RCLTSCTSLE IVQLIKAYKI FSNVSPIPLF SSFTANQAIL DVIDGSMNVH  60
VIDFDIGLGG HWASFLKAVA EKAESRKVNS PAVRITAVVP EEYVLESKLI KENLSSFCSE  120
LGIRFDIEFV SVRVFEFVSF KSVKFVNGEK TAVVLSPTIF RRIGGGFVND LRRVSPDVVV  180
YVDGELNGYG NALFRQTVID GVELFTTVME SLEAANGGGG GGGGGGEWMR SIEMFVLLPK  240
IIAMVEDSGR RGTAWREMFG RAGMRPVVMS QFAEFQAECL LRRVQVRGFH VAKRHAEMVL  300
CWHDRPLVAT SVW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-192231393378Protein SCARECROW
5b3h_A1e-192231392377Protein SCARECROW
5b3h_D1e-192231392377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753478.11e-169scarecrow-like protein 15
SwissprotO232103e-97SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1B0T6R90.0A0A1B0T6R9_CHRMO; GRAS protein (Fragment)
STRINGXP_009803270.11e-145(Nicotiana sylvestris)
STRINGXP_009590475.11e-145(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.12e-87GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]