PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan013674
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GRAS
Protein Properties Length: 513aa    MW: 57172.1 Da    PI: 5.0725
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55036959PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-790160997PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.61.3e-1281445132374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                +e L+ cA+av+++++  a+ l++ l+ l+s  g+p++R+aay++e+L arl++s+s ++k+l+++e +    +e ++++ l++e++P++kf+hl aN a
  Aan013674 144 KEGLFICAKAVAENKTLTAEGLISMLRPLVSVGGEPTERVAAYIMEGLVARLSSSGSVICKSLKCKEPT---GAELFSYMMLLYEACPYFKFGHLSANGA 240
                567999**************************************************************9...999************************* PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I ea+++e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp+lRiTg++++++   +   l+ +g+rLak+Ae++++pfef+  +  +++d+++++Lrv+pg
  Aan013674 241 IAEAIKNEDRIHIIDFQIAQGGQWMTLIQALAARPGGPPRLRITGMDDSRNAfaRGGGLNIVGQRLAKLAESCKMPFEFHG-IPVSVSDIQIQHLRVQPG 339
                ************************************************98889999*************************.6999************** PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                Eal+Vn++l lh+l+de+v+ ++ + +  k+ ++lsPkvv++veqea+ n+++F++rf ea++yysa+f+s++a+l r+++eri+vE+++l+ eivn++a
  Aan013674 340 EALVVNCALVLHHLPDETVHPTKSQGQSDKAHQELSPKVVTLVEQEANVNTAKFFDRFQEAFSYYSAMFESIDATLKRDHKERINVEQHCLAGEIVNILA 439
                ********************999999************************************************************************** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                ceg er+erhe l++Wr+r+++aGF+p+pls+++++++k+ll+++ +  yr+ee++g+l+lgW++r+Lvs SaW+
  Aan013674 440 CEGGEREERHELLSTWRSRFTKAGFTPYPLSSYVNATIKTLLENYCD-KYRLEERDGALFLGWMNRALVSSSAWQ 513
                *********************************************95.5*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.202117494IPR005202Transcription factor GRAS
PfamPF035144.5E-126144513IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MGESNQPYYW TTSTEQDTDQ NLYSTDVNQF SVQTPELTNN SITASFSSNG SPTSLQDSHS  60
FQPEPYHSPD YTYTSQITKS GLEDNVDDLH LRLSEIQAIL ESDHDFAESF DVSSSWGVRD  120
THNVIPSNDE YHMMEKAVSR GDLKEGLFIC AKAVAENKTL TAEGLISMLR PLVSVGGEPT  180
ERVAAYIMEG LVARLSSSGS VICKSLKCKE PTGAELFSYM MLLYEACPYF KFGHLSANGA  240
IAEAIKNEDR IHIIDFQIAQ GGQWMTLIQA LAARPGGPPR LRITGMDDSR NAFARGGGLN  300
IVGQRLAKLA ESCKMPFEFH GIPVSVSDIQ IQHLRVQPGE ALVVNCALVL HHLPDETVHP  360
TKSQGQSDKA HQELSPKVVT LVEQEANVNT AKFFDRFQEA FSYYSAMFES IDATLKRDHK  420
ERINVEQHCL AGEIVNILAC EGGEREERHE LLSTWRSRFT KAGFTPYPLS SYVNATIKTL  480
LENYCDKYRL EERDGALFLG WMNRALVSSS AWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-631455136375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.93210.0trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021993292.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A1L5IZA50.0A0A1L5IZA5_CHRLV; Scarecrow-like transcription factor PAT1 protein
STRINGEOX934420.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-174scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]