PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan013386
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family SBP
Protein Properties Length: 141aa    MW: 16210.3 Da    PI: 8.8764
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-131754PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.31.9e-4257133177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +CqvegC++d++++k+yhrrhkvCevh+kap v+++g +qrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk++
  Aan013386  57 CCQVEGCTTDMTNCKTYHRRHKVCEVHAKAPIVVTNGCQQRFCQQCSRFHDLSEFDDAKRSCRRRLAGHNERRRKTT 133
                6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375754.0E-554140IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.5E-3350119IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.78755132IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-3856136IPR004333Transcription factor, SBP-box
PfamPF031102.2E-3258131IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
METTKSGRVV KIMNNKLKNV MMDECEDDDD ENFGEGRRKK KVLGKRGSGS AGSIQPCCQV  60
EGCTTDMTNC KTYHRRHKVC EVHAKAPIVV TNGCQQRFCQ QCSRFHDLSE FDDAKRSCRR  120
RLAGHNERRR KTTYENYDGN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-3748131384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024988508.15e-73squamosa promoter-binding protein 1-like
SwissprotQ387412e-48SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A103XU001e-71A0A103XU00_CYNCS; Squamosa promoter-binding-like protein
STRINGEOY130694e-45(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.16e-30squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]