PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan013109 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | ERF | ||||||||
Protein Properties | Length: 159aa MW: 17971.9 Da PI: 10.4701 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.1e-17 | 50 | 100 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g++ Ae r p++ g +r +lg+++t+eeAa a+++a+ k +g Aan013109 50 KFRGVRRRP-WGKFTAEMRNPVKKG--ARLWLGTYDTPEEAAMAYDRAAFKHRG 100 89*******.**********76643..************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.9E-29 | 49 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.71E-28 | 50 | 110 | No hit | No description |
SMART | SM00380 | 1.1E-33 | 50 | 114 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.657 | 50 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 50 | 109 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-13 | 50 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
XVPLNWDFST GNVVPIAEDN ESQPRAKNSN KLDDAKDIVA KALPSLPERK FRGVRRRPWG 60 KFTAEMRNPV KKGARLWLGT YDTPEEAAMA YDRAAFKHRG SHALLNFPHL IESHNKHPEK 120 YRTKKRAMTV TTSSSSSSSS SDSSKNSFEK RNKSCAYDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-27 | 51 | 113 | 6 | 68 | ATERF1 |
3gcc_A | 4e-27 | 51 | 113 | 6 | 68 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023757561.1 | 8e-57 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A2U1KID3 | 8e-88 | A0A2U1KID3_ARTAN; DNA-binding domain-containing protein | ||||
STRING | POPTR_0014s04640.1 | 1e-31 | (Populus trichocarpa) | ||||
STRING | XP_008345528.1 | 2e-31 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-33 | ethylene-responsive element binding factor 13 |