PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan013097 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | HB-other | ||||||||||||
Protein Properties | Length: 259aa MW: 28975 Da PI: 5.8956 | ||||||||||||
Description | HB-other family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.6 | 5.6e-10 | 51 | 88 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Aan013097 51 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 88 665559******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 12.568 | 29 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-9 | 32 | 96 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.87E-12 | 32 | 93 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-18 | 33 | 99 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-29 | 35 | 98 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.2E-19 | 49 | 88 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
RVSKTPRLKL LEQSLRQQRA FHQMGMMEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS 60 DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEEMYQQ EGKEEVGDQL QDEDQDIIDQ 120 ETNKSDTNIN YNNNNQQHKT NGPSSSSSSS ALAQTSMPPP PPQPPATTPT SAKRSEINDS 180 DYDASNHAIN MQKCLAENQA TPPGNTSNVP PSFQADADMG STLISFGTNT GDVSLTLGLR 240 HAGNIPEKDS FSVRDFGGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 4e-17 | 38 | 96 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 4e-17 | 38 | 96 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024973578.1 | 1e-105 | BEL1-like homeodomain protein 4 | ||||
Swissprot | Q9SW80 | 5e-77 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | A0A2U1MD20 | 0.0 | A0A2U1MD20_ARTAN; TALE protein | ||||
STRING | Aquca_010_00398.1 | 9e-88 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 8e-64 | BEL1-like homeodomain 2 |
Publications ? help Back to Top | |||
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