PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan013078
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 272aa    MW: 30260.1 Da    PI: 9.935
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-105095PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-07101121526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C +fa+ G+Ck G++C+F Hg
  Aan013078 101 PCLYFAK-GYCKNGASCRFTHG 121
                8******.***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.40496123IPR000571Zinc finger, CCCH-type
SMARTSM003560.001498122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.67E-598121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5100122IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-5101121IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
FTKHVKNSVS RQPTRRRQRR HLRRHRHLFL AAEPDLLDEL HIQDQLSFLN DGSPPFYPDL  60
VSPNGSGEVF SPWGGGAAGG PHRRSASVND VCLGGDDGWK PCLYFAKGYC KNGASCRFTH  120
GAGGEADMAA NVMEQCQELL RSKSAHQQRL LLAAAAAAGS PPSFPFPNSP KSMNFLLQQQ  180
SDSPRMAAAA LMMGEEMNKF GRSRNDFSLG MLNPGSRQIY LTFPADSTFR XKKMFQTTSA  240
MYGPVQDVRI PYQQKRMFGF VTFVYAETVV ER
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11019RQPTRRRQRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.15522e-67leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021980352.11e-122zinc finger CCCH domain-containing protein 53-like
RefseqXP_021980359.11e-122zinc finger CCCH domain-containing protein 53-like
RefseqXP_024983746.11e-122zinc finger CCCH domain-containing protein 53-like
RefseqXP_024983747.11e-122zinc finger CCCH domain-containing protein 53-like
SwissprotQ0D3J92e-61C3H53_ORYSJ; Zinc finger CCCH domain-containing protein 53
TrEMBLA0A2U1M8K51e-139A0A2U1M8K5_ARTAN; Uncharacterized protein
STRINGGLYMA12G01350.11e-84(Glycine max)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]