PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Aan012912 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
|
||||||||||||
Family | Dof | ||||||||||||
Protein Properties | Length: 68aa MW: 8073.91 Da PI: 8.9896 | ||||||||||||
Description | Dof family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 64.3 | 2.1e-20 | 35 | 67 | 2 | 34 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCk 34 +++alkcprCds ntkfCyynnyslsqPr+fCk Aan012912 35 PHEALKCPRCDSLNTKFCYYNNYSLSQPRHFCK 67 57899***************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 4.6E-17 | 37 | 67 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-11 | 37 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 17.737 | 39 | 68 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 68 aa Download sequence Send to blast |
MAAPGVRVME KPMQLQQHQQ QQQQQQQQQQ QPPPPHEALK CPRCDSLNTK FCYYNNYSLS 60 QPRHFCKX |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: The transcript levels of the gene accumulate in dry seeds and decay gradually during after-ripening and also upon seed imbibition. {ECO:0000269|PubMed:22155632}. | |||||
Uniprot | TISSUE SPECIFICITY: The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) form a short-range concentration gradient that peaks at protophloem sieve elements (PSE). {ECO:0000269|PubMed:30626969}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that negatively affects seed germination and opposes TCP14 function in the regulation of a specific set of abscisic acid-related genes (PubMed:22155632). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:30626969}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By cytokinin in procambium. {ECO:0000269|PubMed:30626969}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019170253.1 | 1e-20 | PREDICTED: dof zinc finger protein DOF1.4 isoform X1 | ||||
Refseq | XP_019170254.1 | 1e-20 | PREDICTED: dof zinc finger protein DOF1.4 isoform X2 | ||||
Swissprot | Q9M1E6 | 3e-17 | DOF32_ARATH; Dof zinc finger protein DOF3.2 | ||||
TrEMBL | A0A142IXE2 | 1e-21 | A0A142IXE2_CHRMO; DOF transcription factor 9 (Fragment) | ||||
STRING | XP_010678379.1 | 2e-18 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60850.1 | 4e-18 | OBF binding protein 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|