PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan011342 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | HB-other | ||||||||
Protein Properties | Length: 132aa MW: 14538.5 Da PI: 10.8055 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.5 | 1.9e-07 | 13 | 75 | 6 | 56 |
S--HHHHHHHHHHHHHSS..S--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknr..ypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 +ft+ ++ e+e+ + n+ p ++ LA+k +++ +qV +WFqNrR+ k Aan011342 13 RFTPPEIAEMEAILQANQiaVPERQILVSLAEKFsateerkgkmEVQMKQVWNWFQNRRYAIK 75 58999999999999975422799999999999999999999999***************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.6E-4 | 7 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.54E-10 | 12 | 79 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-7 | 12 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.94E-6 | 13 | 78 | No hit | No description |
PROSITE profile | PS50071 | 8.892 | 13 | 77 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.2E-5 | 13 | 75 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MGRPPSNGGP SFRFTPPEIA EMEAILQANQ IAVPERQILV SLAEKFSATE ERKGKMEVQM 60 KQVWNWFQNR RYAIKSKQAK SPGKLDVTQM PRDNSAMVKP APQPTQPLAA STATVKTLPQ 120 APQHPTVPAA SX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024960002.1 | 7e-63 | titin-like isoform X1 | ||||
Swissprot | Q8RWJ7 | 3e-38 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A2U1MLL7 | 8e-83 | A0A2U1MLL7_ARTAN; Homeodomain-like, SAWADEE domain protein | ||||
STRING | EOY13134 | 4e-44 | (Theobroma cacao) | ||||
STRING | XP_007133179.1 | 2e-44 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.3 | 8e-41 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |