PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan010306
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family ERF
Protein Properties Length: 163aa    MW: 18357.8 Da    PI: 9.7635
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55172189PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-161766255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +ykG+r +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a   l+g
  Aan010306 17 QYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVYLLRG 66
               69*****99.**********9...336*********************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-301675IPR001471AP2/ERF domain
SMARTSM003802.8E-371780IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-211775IPR016177DNA-binding domain
PfamPF008477.8E-101763IPR001471AP2/ERF domain
CDDcd000181.25E-261776No hitNo description
PROSITE profilePS5103222.1681774IPR001471AP2/ERF domain
PRINTSPR003673.1E-111829IPR001471AP2/ERF domain
PRINTSPR003673.1E-115676IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDGGCSSTRK RKTDERQYKG IRMRKWGKWV AEIREPNKRS RIWLGSYSTA VAAARAYDTA  60
VYLLRGPSAR LNFPELLASD VGQDELSAAS IRKKAAEVGA RVDAFETSGA HDHAKTFEMK  120
PKLELELELE LKSKPKLSWF EDKPDLNKKP KPEPGSDYTD GDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1517751473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1712TRKRKT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024962663.13e-67ethylene-responsive transcription factor ERF011-like
SwissprotQ9FH949e-46ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A2U1M3G52e-81A0A2U1M3G5_ARTAN; Uncharacterized protein
STRINGPGSC0003DMT4000102281e-60(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.13e-38DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]