PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan010063
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family HB-other
Protein Properties Length: 170aa    MW: 20176.8 Da    PI: 5.0841
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55214026PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.72.6e-1051881954
               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
               Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Aan010063 51 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 88
               665559******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.4222992IPR001356Homeobox domain
SMARTSM003891.2E-93296IPR001356Homeobox domain
CDDcd000862.06E-113293No hitNo description
SuperFamilySSF466892.35E-183399IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-303598IPR009057Homeodomain-like
PfamPF059204.6E-194988IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
XRHETPRLKM LEQSLRQQRA FHQMGMMEPE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS  60
DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEEMYQQ ESKEEGDQNN SPPQQDEEDQ  120
DNNDDEHQEH QEHDTRYNTF RDNTMNVDDH QSSPSSVAAM TTSNDNTSCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-183896563Homeobox protein Meis2
3k2a_B9e-183896563Homeobox protein Meis2
4xrm_A9e-183896563Homeobox protein Meis2
4xrm_B9e-183896563Homeobox protein Meis2
5bng_A1e-173896159Homeobox protein Meis2
5bng_B1e-173896159Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020241722.18e-70LOW QUALITY PROTEIN: BEL1-like homeodomain protein 4
SwissprotQ9SW802e-62BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A2U1P1901e-109A0A2U1P190_ARTAN; TALE protein
STRINGBra010577.1-P3e-70(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.22e-64BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]