PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan010052
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GATA
Protein Properties Length: 170aa    MW: 18185.9 Da    PI: 9.6668
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55083743PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.9e-184074135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C+ Cgt+kTplWR gp g+k+LCnaCG++ rk+++
  Aan010052 40 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKRRR 74
               ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.1E-153485IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-123774No hitNo description
CDDcd002027.80E-123974No hitNo description
Gene3DG3DSA:3.30.50.103.2E-153973IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034404065IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.074070IPR000679Zinc finger, GATA-type
PfamPF003202.6E-164074IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGDVSDKGSE CEDMMMMMNS PERCGGSISS DGGDSFIKTC ADCGTSKTPL WRGGPAGPKS  60
LCNACGIRSR KRRRALLGVS TNDVKKPKKT TSTITTTTTS GGDSQNSGLT TICKSDYMGD  120
LCLKKRIMAL GSEVLVQRPR SKVTKHRRKP SEEEKAAYLL MAISCGSVFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024986422.14e-75GATA transcription factor 16-like
SwissprotQ9FJ104e-32GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A2U1PAN01e-100A0A2U1PAN0_ARTAN; Uncharacterized protein
STRINGXP_009590421.12e-48(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-31GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]