PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan009946
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C2H2
Protein Properties Length: 173aa    MW: 19054.5 Da    PI: 8.2559
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55203889PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-3148PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00144668123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C++ F++   L  H  +H
  Aan009946 46 FECKTCNRQFPSFQALGGHRASH 68
               89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.37E-844115No hitNo description
PfamPF139122.8E-134570IPR007087Zinc finger, C2H2
SMARTSM003550.164668IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8274673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
PROSITE profilePS501579.32893120IPR007087Zinc finger, C2H2
PfamPF139126.1E-1093117IPR007087Zinc finger, C2H2
SMARTSM003550.5493115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDHLSMKRSR VEELDTAITN MANCLMLLSR GPSSNEPHDN SPSRVFECKT CNRQFPSFQA  60
LGGHRASHKK PRLSSDGDVA HGTNLVPAKP KSHECTICGV EFAIGQALGG HMRRHRATTT  120
NENKSSTSSD SSTFILKDVK SQNVSLDLNL TPLENDLEFR HGKVAPITIE LFI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023749824.17e-93zinc finger protein ZAT11-like
TrEMBLA0A2U1KQC71e-116A0A2U1KQC7_ARTAN; Zinc finger, C2H2
STRINGXP_009762518.12e-57(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-38C2H2 family protein