PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan009810
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family NF-YB
Protein Properties Length: 176aa    MW: 19089 Da    PI: 5.6782
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55088518PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-981PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1841.1e-5726122298
      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegekk 98 
                reqdrflPian+srimkk lPan+ki+kdak+tvqecvsefisfvtseasdkcq+ekrktingddllwa+atlGfedy++plk+yl++yreleg++k
  Aan009810  26 REQDRFLPIANISRIMKKGLPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLSRYRELEGDTK 122
                89********************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.6E-5320134IPR009072Histone-fold
SuperFamilySSF471131.55E-4028133IPR009072Histone-fold
PfamPF008083.7E-283195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.9E-215977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.9E-217896No hitNo description
PRINTSPR006158.9E-2197115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MADVPGSPAG GSHESGGEQS PHSNIREQDR FLPIANISRI MKKGLPANGK IAKDAKDTVQ  60
ECVSEFISFV TSEASDKCQK EKRKTINGDD LLWAMATLGF EDYIDPLKAY LSRYRELEGD  120
TKGSARGGDG SGKKDAVGSQ LVPNAQYTHQ GSFCTGNEIF LNSHVLTSNK EDMNLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4625116192Transcription factor HapC (Eurofung)
4g92_B3e-4625116192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024976536.11e-106nuclear transcription factor Y subunit B-1-like
RefseqXP_024976545.11e-106nuclear transcription factor Y subunit B-1-like
SwissprotQ8VYK43e-80NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A1B0T7031e-113A0A1B0T703_CHRMO; NF-Y protein (Fragment)
TrEMBLA0A2U1QNJ11e-113A0A2U1QNJ1_ARTAN; NF-Y protein
STRINGcassava4.1_017552m3e-93(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-82nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]