PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Aan009775 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
|
||||||||||||
Family | NF-YB | ||||||||||||
Protein Properties | Length: 177aa MW: 19365.2 Da PI: 4.2961 | ||||||||||||
Description | NF-YB family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 41.5 | 3.3e-13 | 20 | 114 | 6 | 94 |
NF-YB 6 rflPianvsrimkkvlPa......nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++lP a v r++k+ l + + ++ kd+ e fi ++++ a+d c++ kr+tin++d++ al ++ f +++++l++ l+++++ + Aan009775 20 EELPKAVVRRVVKEKLSQlsqdgaDIQVLKDSLSAFSESSRIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPEFIASLRTSLEEFKQKN 114 689**********998752211114467899999999***************************************************9998765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.7E-31 | 18 | 155 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-9 | 21 | 91 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.24E-24 | 22 | 148 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MATSPKATPA VSEKVIGEAE ELPKAVVRRV VKEKLSQLSQ DGADIQVLKD SLSAFSESSR 60 IFIHYLSATA NDICKESKRQ TINAEDVFKA LEEIEFPEFI ASLRTSLEEF KQKNIKRKSD 120 SSKAKEAKKS KTDEPATENG EANENGNEDE NGVDENGVDE NGVDENGVDE NGVADTE |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023768952.1 | 4e-78 | DNA polymerase epsilon subunit 3-like | ||||
TrEMBL | A0A1B0T710 | 9e-97 | A0A1B0T710_CHRMO; NF-Y protein (Fragment) | ||||
STRING | Migut.D02442.1.p | 3e-53 | (Erythranthe guttata) | ||||
STRING | XP_010031521.1 | 5e-53 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27470.1 | 9e-37 | nuclear factor Y, subunit B11 |