PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Aan009686 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
|
||||||||||||
Family | C2H2 | ||||||||||||
Protein Properties | Length: 179aa MW: 19486.4 Da PI: 8.8361 | ||||||||||||
Description | C2H2 family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00056 | 40 | 57 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cg s+ ++++L+ H Aan009686 40 SCEICGISCDTNEMLNIH 57 6****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 0.32 | 36 | 70 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 9.7 | 39 | 63 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 8.73E-8 | 40 | 71 | No hit | No description |
Pfam | PF12874 | 4.2E-4 | 40 | 63 | No hit | No description |
SuperFamily | SSF57667 | 2.44E-9 | 139 | 174 | No hit | No description |
SMART | SM00451 | 0.0081 | 141 | 175 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 3.8 | 144 | 168 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 2.7E-7 | 146 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 179 aa Download sequence Send to blast |
XPVSIPKVVE PVSTPKLVEV LQDSLKKDDK IVVSHEVKPS CEICGISCDT NEMLNIHFTG 60 RKHQKNLKKL IKPSVPHKPV STTDDGGEIA TPMVVDQLQD SLTDDKMVNE GGSIRKGKRA 120 GSQLDIETKK QKIMEVGTAP ASLRACTVCN VVCNSPKVFD YHMAGQKHLA MVAKQGKAQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Aan.494 | 0.0 | leaf |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2U1QH78 | 1e-120 | A0A2U1QH78_ARTAN; Zinc finger, C2H2-like protein |