PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan008353 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | SBP | ||||||||||||
Protein Properties | Length: 220aa MW: 24233.9 Da PI: 9.3559 | ||||||||||||
Description | SBP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125.4 | 2.4e-39 | 147 | 219 | 1 | 73 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 +CqvegC+ dls+ keyhr+hkvCe hsk+p+v+v+g+e+rfCqqCsrfh++sefDeekrsCrrrL++hn+rr Aan008353 147 RCQVEGCNLDLSSSKEYHRKHKVCESHSKSPKVIVAGVERRFCQQCSRFHSMSEFDEEKRSCRRRLSDHNARR 219 6***********************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-33 | 143 | 209 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.137 | 145 | 220 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.66E-36 | 146 | 219 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-30 | 148 | 219 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MEWEWENLDM YNSKSIMTPK KMQPAYWGVE EVEAIDGSIS FNVSGVVGGS GGSVSDVGNN 60 SSGKSSISAS TESSMKEGMK GSGYSFVGSV SSGEPFIGLK LGKRTYFENG YAKNNTNKAY 120 SQLAVPASTI STGKKVKSAY QTTPIVRCQV EGCNLDLSSS KEYHRKHKVC ESHSKSPKVI 180 VAGVERRFCQ QCSRFHSMSE FDEEKRSCRR RLSDHNARRX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-28 | 148 | 219 | 11 | 82 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024991191.1 | 4e-97 | squamosa promoter-binding-like protein 10 isoform X1 | ||||
Refseq | XP_024991192.1 | 2e-97 | squamosa promoter-binding-like protein 2 isoform X2 | ||||
Swissprot | Q9S840 | 1e-55 | SPL2_ARATH; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | A0A2U1LZ65 | 1e-157 | A0A2U1LZ65_ARTAN; SBP-like protein | ||||
STRING | XP_010252163.1 | 2e-67 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 1e-49 | squamosa promoter binding protein-like 10 |