PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan006905

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

G2-like

Protein Properties

Length: 265aa MW: 29651.1 Da PI: 6.5158

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55137229	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.7	2.6e-33	20	74	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av+qLGG+ekAtPk++++lm+++gLtl+h+kSHLQkYRl Aan006905 20 KPRLKWTPELHQRFVDAVAQLGGPEKATPKSLMRLMGIHGLTLYHLKSHLQKYRL 74 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.695	17	77	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-31	18	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.38E-16	19	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-23	20	75	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-9	22	73	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-23	117	162	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MAHENIQKQD LNLVLSSDAK PRLKWTPELH QRFVDAVAQL GGPEKATPKS LMRLMGIHGL 60 TLYHLKSHLQ KYRLGKIQQS SVCSGSIQEE FVDDHRSEIT SIHQNEEIPN QTNESVKIAQ 120 ALQMQMEVQR KLHEQIEVQR HLQLRIEAQG KYLQSVLRKA QDTLAGYNSS AIEVEVAKAE 180 LSQLVSMVDN GCPSSLSVLT ELEDSTFKKD SNESPKTKAI GSSLESSLTS SESSERKEDD 240 HQVLSLMEMN TGRKRSGNTI SDGNX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024988300.1	1e-154	myb family transcription factor PHL8 isoform X1
Refseq	XP_024988301.1	1e-154	myb family transcription factor PHL8 isoform X1
Refseq	XP_024988302.1	1e-154	myb family transcription factor PHL8 isoform X1
Swissprot	F4I274	1e-74	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A2U1NX42	0.0	A0A2U1NX42_ARTAN; Myb domain
STRING	XP_008339891.1	9e-98	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	1e-75	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]