PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan006580

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

HD-ZIP

Protein Properties

Length: 278aa MW: 31682.2 Da PI: 5.4257

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-68532	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	67	120	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++++LA+ lgL+ rqV +WFqNrRa++k Aan006580 67 KKRRLNLEQVKALEKSFELGNKLEPERKTQLARALGLQPRQVAIWFQNRRARWK 120 4557899**********************************************9 PP
2	HD-ZIP_I/II	128.4	2.9e-41	66	156	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr+++++k++n++L++ +++L++el Aan006580 66 EKKRRLNLEQVKALEKSFELGNKLEPERKTQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFESVKADNDALKNLNKKLHAEL 156 69**************************************************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.84E-19	58	124	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.184	62	122	IPR001356	Homeobox domain
SMART	SM00389	1.7E-18	65	126	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-15	67	120	IPR001356	Homeobox domain
CDD	cd00086	1.72E-16	67	123	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.2E-19	69	129	IPR009057	Homeodomain-like
PRINTS	PR00031	7.2E-6	93	102	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	97	120	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.2E-6	102	118	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.5E-13	122	160	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MSFLPPEPMF FGYEDDHHPP HEQYQGVGTL LMRRSMSYSG MDRCEETRGH AADEDLSEDD 60 GSQLGEKKRR LNLEQVKALE KSFELGNKLE PERKTQLARA LGLQPRQVAI WFQNRRARWK 120 TKQLEKDYDV LKRQFESVKA DNDALKNLNK KLHAELLAVK GGESNGVRPI NLNKETEGSW 180 SNGSENSCDL NTVTGTMTPS EESPIFYTQI SNNMYPNMSS IGPNSGLTQL LQNQATTDLF 240 SQRLNQSVGN EGFCNMFNGI EDQPSFWPWP EQHSQHLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARWKTKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023737346.1	0.0	homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8S7W9	2e-72	HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBL	A0A2U1PPL6	0.0	A0A2U1PPL6_ARTAN; Leucine zipper, homeobox-associated, Homeodomain-like protein
STRING	XP_010256832.1	1e-109	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	3e-71	HD-ZIP family protein