PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan005654
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family RAV
Protein Properties Length: 350aa    MW: 39487.5 Da    PI: 10.0387
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-126513PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63.2e-1364112155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s++kGV   + +grW A+I++      ++r++lg+f  +eeAaka++ a ++++g
  Aan005654  64 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAKAYDIAVQRFRG 112
                689***9788.8*********3.....5************************998 PP
2B397.58.4e-31191283189
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                f+k+ tpsdv+k++rlv+pk++ae+h    +g++ +++ l +ed+++  W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+ +   +
  Aan005654 191 FQKIVTPSDVGKLNRLVIPKQHAEKHfpvqKGSTSKGVLLHFEDSDSTIWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDSVSFYSSTGPD 283
                99****************************88899****************************************************543344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-864112IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1764120IPR016177DNA-binding domain
CDDcd000187.87E-2664120No hitNo description
SMARTSM003803.4E-2965126IPR001471AP2/ERF domain
PROSITE profilePS5103220.23165120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2065121IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.1E-39183291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-29187279IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-27189277No hitNo description
SMARTSM010191.3E-23191292IPR003340B3 DNA binding domain
PROSITE profilePS5086313.31191292IPR003340B3 DNA binding domain
PfamPF023621.2E-27191280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MYTSCTYDKT TTSETISTIP QLVTTPPTRE TSLRRLGSGA DVVLDLESGV EVEAEAQSKK  60
LRSSRFKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEEEAA KAYDIAVQRF RGRDAVTNFP  120
QIDTNKKEAK MEASFLSNHS KSEIVDMLRK HTYNDELEQS KRSCTLHKTS QQTGSNKFSR  180
SGSILPREHL FQKIVTPSDV GKLNRLVIPK QHAEKHFPVQ KGSTSKGVLL HFEDSDSTIW  240
RFRYSYWNSS QSYVLTKGWS RFVKEKNLKA GDSVSFYSST GPDKQLYIDS KPKIGSSGIA  300
NSQPIEPVQM LRLFGVNISS VSSCNGKRSN TEMNVLGFQN CKKQRVIDVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-5018829611120DNA-binding protein RAV1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746260.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9C6M51e-129RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A2U1LVC70.0A0A2U1LVC7_ARTAN; Ethylene response DNA binding factor 3
STRINGcassava4.1_010157m1e-149(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-131RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]