PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan004961

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB_related

Protein Properties

Length: 596aa MW: 65739.4 Da PI: 5.7943

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55163289	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.1	2.3e-14	97	140	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rWT++E+ +++a k++G W +I +++g ++t+ q++s+ qk+ Aan004961 97 ERWTEDEHNSFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 140 69***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.524	91	145	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-7	92	142	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.1E-15	93	146	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-15	94	143	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-10	95	143	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-12	97	139	IPR001005	SANT/Myb domain
CDD	cd00167	1.45E-8	98	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
XFGLVVYGGF VERFSRVSAR FGEDSSVVVR YQVLLNKATA KLVSCVDATR NERRLLYHLL 60 VPEDLTQRYQ SLDGLLFFWR KTQHKDEKTL YNNKTTERWT EDEHNSFLEA LKLYGRAWQR 120 IEEHIGTKTA VQIRSHAQKF FTKLEKEAIA KGVPIKQALD IEIPPPRPKR KPNYPYPRKT 180 GPKDPQVAEK DGKQETLISS LQSGIQILDL EKNPLPQTTC HEEELGNETN EEHGTGTEGP 240 SLSHEGPCAS SDNENSAPQA FKEFIPVLEK PINQDETNGS FTSIETRKHQ KLDKDGINYT 300 TVTSNTSLYE GRYPDKLSQP VLSLNDIRGV QNYPRHVPVQ VIDGNQGKDT VPTETSFLES 360 TLTKSGEVHD IVNKAASATT SVHQNNASSY PTFHPLFTPF SNNQENHRSF LHVSSTVSSL 420 IVSSLLQNPA AHAAASFAAT FWHPEASSGD SLSRDHPEPP SMAAIAAATV AAATAWWAAH 480 GLLPVCTPFY PGYATSPYSC GTPTDANQER VANNGTSEVV LQEEKTEAEK TQGLPKGSPD 540 QSSSDDTDGK LNTELSPDDT APVAEVHDST TANIGNSAPQ AFKEFIPVLE KPINQX

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

XFGLVVYGGF VERFSRVSAR FGEDSSVVVR YQVLLNKATA KLVSCVDATR NERRLLYHLL  60
VPEDLTQRYQ SLDGLLFFWR KTQHKDEKTL YNNKTTERWT EDEHNSFLEA LKLYGRAWQR  120
IEEHIGTKTA VQIRSHAQKF FTKLEKEAIA KGVPIKQALD IEIPPPRPKR KPNYPYPRKT  180
GPKDPQVAEK DGKQETLISS LQSGIQILDL EKNPLPQTTC HEEELGNETN EEHGTGTEGP  240
SLSHEGPCAS SDNENSAPQA FKEFIPVLEK PINQDETNGS FTSIETRKHQ KLDKDGINYT  300
TVTSNTSLYE GRYPDKLSQP VLSLNDIRGV QNYPRHVPVQ VIDGNQGKDT VPTETSFLES  360
TLTKSGEVHD IVNKAASATT SVHQNNASSY PTFHPLFTPF SNNQENHRSF LHVSSTVSSL  420
IVSSLLQNPA AHAAASFAAT FWHPEASSGD SLSRDHPEPP SMAAIAAATV AAATAWWAAH  480
GLLPVCTPFY PGYATSPYSC GTPTDANQER VANNGTSEVV LQEEKTEAEK TQGLPKGSPD  540
QSSSDDTDGK LNTELSPDDT APVAEVHDST TANIGNSAPQ AFKEFIPVLE KPINQX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.6081	0.0	trichome

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024996248.1	1e-177	protein LHY
Refseq	XP_024996249.1	1e-177	protein LHY
Refseq	XP_024996250.1	1e-177	protein LHY
TrEMBL	A0A2U1NBF7	0.0	A0A2U1NBF7_ARTAN; Late elongated hypocotyl
STRING	VIT_15s0048g02410.t01	1e-100	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	3e-39	MYB_related family protein