PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan004559 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | ERF | ||||||||||||
Protein Properties | Length: 164aa MW: 17776.9 Da PI: 11.0462 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 121 | 157 | 2 | 43 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAa 43 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f t eA+ Aan004559 121 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFET-AEAR 157 59*******.**********94....36**********.8886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.04E-18 | 120 | 155 | No hit | No description |
SMART | SM00380 | 2.8E-9 | 121 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.436 | 121 | 156 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-19 | 121 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-12 | 121 | 155 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.3E-10 | 121 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-9 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-9 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MDNRLTNKFN DQPSTSIHHH QPPPSRRLTT HEEAAAMVAT LRNVISGSTN SLSIFLGSYD 60 AVPNPQTCRV CGISGCLGCN FFTHNSNHNN VGASAGVGVA VQTGARAEAR VGGPIKKKKK 120 NYRGVRQRPW GKWAAEIRDP RKAARVWLGT FETAEARVGG PIKX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-14 | 118 | 155 | 2 | 40 | ATERF1 |
3gcc_A | 2e-14 | 118 | 155 | 2 | 40 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.5576 | 0.0 | trichome |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023729970.1 | 6e-46 | ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A221CFB9 | 1e-41 | A0A221CFB9_TARKO; ERF | ||||
STRING | Migut.B00347.1.p | 2e-34 | (Erythranthe guttata) | ||||
STRING | XP_010030650.1 | 5e-34 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-25 | redox responsive transcription factor 1 |