PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan004492
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family NF-YB
Protein Properties Length: 171aa    MW: 18561.7 Da    PI: 5.9916
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55056884PU_unrefUnigeneView CDS
gnl|UG|Aan#S55098975PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-109811PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB183.51.7e-5728124298
      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegekk 98 
                reqdrflPian+srimkk +Pan+ki+kdaketvqecvsefisf+tseasdkcq+ekrkting+dllwa+atlGfedy+eplk yl++yre+eg++k
  Aan004492  28 REQDRFLPIANISRIMKKGVPANGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGEDLLWAMATLGFEDYIEPLKRYLSRYREMEGDTK 124
                89********************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.9E-5425136IPR009072Histone-fold
SuperFamilySSF471132.4E-4130134IPR009072Histone-fold
PfamPF008081.3E-283397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.8E-226179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.8E-228098No hitNo description
PRINTSPR006153.8E-2299117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAEGPASPCG GGSHESGGDM SPRAGNAREQ DRFLPIANIS RIMKKGVPAN GKIAKDAKET  60
VQECVSEFIS FITSEASDKC QKEKRKTING EDLLWAMATL GFEDYIEPLK RYLSRYREME  120
GDTKGSAKGQ DGSASRNGMQ PDLNAQLGSQ GFYSQGLTYG NSQLDSIRLN I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4728118393NF-YB
4awl_B2e-4728118494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4728118494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021973198.11e-97nuclear transcription factor Y subunit B-1-like isoform X2
SwissprotQ8VYK47e-80NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A251UBF11e-95A0A251UBF1_HELAN; Putative histone-fold protein
STRINGXP_009767971.13e-94(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.33e-82nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]