PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan004367 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | ERF | ||||||||||||
Protein Properties | Length: 185aa MW: 20360.8 Da PI: 6.0032 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.1e-20 | 20 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp g ++r++lg+f+tae Aa+a++aa+ +++g Aan004367 20 HYRGVRKRP-WGRYAAEIRDP---GTKTRVWLGTFDTAEAAARAYDAAAINFRG 69 6********.**********8...325***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.236 | 20 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.43E-21 | 20 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 20 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-39 | 20 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.2E-14 | 20 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-22 | 20 | 79 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-11 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MVMKNQTTKP FTAPTVNEVH YRGVRKRPWG RYAAEIRDPG TKTRVWLGTF DTAEAAARAY 60 DAAAINFRGS KAKINFPPSF DGVTVANHNS TLESLTLESE VHPPVELDLM KCVAVVPHAQ 120 PVMFFPYPIY QMEQQQCFDG GYGGGAHSES GSSSSGVDYN SRDDTSYSKQ EINLDLNLAP 180 PTVEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-22 | 20 | 77 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-22 | 20 | 77 | 5 | 63 | ATERF1 |
3gcc_A | 5e-22 | 20 | 77 | 5 | 63 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.3814 | 0.0 | leaf| trichome |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269|PubMed:10945353}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023758260.1 | 8e-72 | ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 3e-40 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A2U1LLW2 | 1e-136 | A0A2U1LLW2_ARTAN; AP2/ERF domain-containing protein | ||||
STRING | XP_009772525.1 | 1e-38 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-27 | erf domain protein 9 |