PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan004197 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | ERF | ||||||||||||
Protein Properties | Length: 199aa MW: 21655.1 Da PI: 4.709 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.5e-18 | 46 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr+++ +g+W +e+r+p++ + r++lg+f tae Aa+a++ a+++l+g Aan004197 46 PVYRGVRQRS-SGKWICEVREPYK---QSRIWLGTFPTAERAARAHDVAALALRG 96 68*****999.7*********865...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.2E-12 | 46 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.3 | 47 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-20 | 47 | 106 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-31 | 47 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.9E-27 | 47 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.81E-29 | 48 | 106 | No hit | No description |
PRINTS | PR00367 | 1.8E-9 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-9 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
SYGSNNWGSS EMDVGESSGT SEEMMLAASN PKKRAGRKKF QETLHPVYRG VRQRSSGKWI 60 CEVREPYKQS RIWLGTFPTA ERAARAHDVA ALALRGRSAC LNFADSWSLP SPASLDPKDI 120 RKAAVEAAET FRPSEDGGGS NIVGTVEYGG NVGYVDEEEE FGMPGLLVNM AEGLMLPPPP 180 SYGGYDEAEY GGDMSLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 45 | 111 | 12 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.4660 | 0.0 | trichome |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023753347.1 | 1e-109 | dehydration-responsive element-binding protein 1D-like | ||||
Swissprot | Q9FJ93 | 3e-67 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A2U1MY56 | 1e-141 | A0A2U1MY56_ARTAN; C-repeat-binding factor 4 | ||||
STRING | Migut.F01150.1.p | 3e-79 | (Erythranthe guttata) | ||||
STRING | XP_010278524.1 | 3e-79 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-54 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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