PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan004147 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | ERF | ||||||||||||
Protein Properties | Length: 203aa MW: 22775.7 Da PI: 6.5166 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.4e-17 | 46 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+e+r+p +k++r++lg++ ta++Aa+a++ a ++++g Aan004147 46 PVYRGVRKRA-SGKWVCEVREP---NKKTRVWLGTYPTADMAARAHDVAVLAMRG 96 68*****888.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-13 | 46 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-31 | 47 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-20 | 47 | 106 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-29 | 47 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.97 | 47 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 48 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.40E-30 | 48 | 106 | No hit | No description |
PRINTS | PR00367 | 1.4E-8 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MATFIQFNAE NNSTESCSTS DEDVHLASQN PKKRAGRKKF KETRHPVYRG VRKRASGKWV 60 CEVREPNKKT RVWLGTYPTA DMAARAHDVA VLAMRGRSAC LNFADSLWRL PTPQSSNVKD 120 IQKAAVKAAE AFRSVNDDVT LAEESNDVKE NHVIYMDDDV VFGMQGFFAD MAEGMMLPPP 180 KSIGYDNCVD DVEFSVEVSL WSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-14 | 45 | 103 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.19445 | 0.0 | trichome |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024975240.1 | 1e-109 | dehydration-responsive element-binding protein 1D-like | ||||
Swissprot | Q9FJ93 | 3e-72 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A481SUF1 | 1e-145 | A0A481SUF1_ARTAN; CBF | ||||
STRING | POPTR_0012s13870.1 | 1e-81 | (Populus trichocarpa) | ||||
STRING | Migut.F01151.1.p | 1e-81 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 1e-74 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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