PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan004056
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C2H2
Protein Properties Length: 211aa    MW: 24131.4 Da    PI: 9.9574
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41937472PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-1582PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.9e-0698120123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k F r  nL+ H r H
  Aan004056  98 FVCEVCNKGFQRDQNLQLHRRGH 120
                89*******************88 PP
2zf-C2H213.30.00025176197223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C++C+k++  +s+ k H + +
  Aan004056 176 ICEKCSKRYAVQSDWKAHSKIC 197
                7*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-797120No hitNo description
Gene3DG3DSA:3.30.160.603.5E-697120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.2E-598120IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9798120IPR007087Zinc finger, C2H2
SMARTSM003550.02198120IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SMARTSM0035588140170IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-5163196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.1E-7170195No hitNo description
SMARTSM00355190175195IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKGMFLDDSM SNLTSASNEA SLSSSSNKNE VGTMYPPTQQ MQQQQQQQQQ QSFASVPINS  60
NNIQTQSNKK KRNLPGNPDP EAEVIAMSPK TLMATNRFVC EVCNKGFQRD QNLQLHRRGH  120
NLPWKLKQRS KTEVVRKKVY VCPEPSCVHH EPARALEDLT GIKKHFSRKH GEKKWICEKC  180
SKRYAVQSDW KAHSKICGTR EYRCDCGTLF S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-21171211343Zinc finger protein JACKDAW
5b3h_F6e-21171211343Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126137KQRSKTEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023757558.11e-128protein indeterminate-domain 7-like
RefseqXP_023757559.11e-128protein indeterminate-domain 7-like
SwissprotQ8H1F56e-98IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2U1M3T71e-130A0A2U1M3T7_ARTAN; Zinc finger, C2H2-like, Zinc finger, double-stranded RNA binding protein
TrEMBLA0A2U1NDV41e-131A0A2U1NDV4_ARTAN; Zinc finger, C2H2-like protein
STRINGPGSC0003DMT4000211891e-109(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-93indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]