PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan003367
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family bHLH
Protein Properties Length: 267aa    MW: 30097 Da    PI: 7.8499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41962506PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-153081PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-1295139554
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                h e+Er+RR+++N++f  Lr+++P        K++Ka+ L  Av YI++L
  Aan003367  95 HVEAERQRREKLNHRFYALRSVVPYV-----SKMDKASLLADAVTYINEL 139
                889**********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.41890139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1794152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.83E-1395144No hitNo description
Gene3DG3DSA:4.10.280.101.3E-1695150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-1095139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1596145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
XTKSVFDPNS LPNISFYNLV DECEFPNQGL QNQVSEGQEE VMSTKKMRMS SSDSDPLEIN  60
SSSSVTTKNT CTPKRKGRRV KGTIAQPEVL APGYHVEAER QRREKLNHRF YALRSVVPYV  120
SKMDKASLLA DAVTYINELK SKIQTLENKK GSESSLIRPR NENQLNVNQC NHDHDKRTIG  180
HSTVNQLEVE VKLLESEAMI RVQSAEVNHP ACKLMDALRS LNLKVHYASV SCVKDMMLQD  240
VIVNLPNGFA SEEDTLRLAI LNKMCLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-2392150664Transcription factor MYC2
5gnj_B3e-2392150664Transcription factor MYC2
5gnj_E3e-2392150664Transcription factor MYC2
5gnj_F3e-2392150664Transcription factor MYC2
5gnj_G3e-2392150664Transcription factor MYC2
5gnj_I3e-2392150664Transcription factor MYC2
5gnj_M3e-2392150664Transcription factor MYC2
5gnj_N3e-2392150664Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.73150.0trichome
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022029453.11e-117transcription factor MYC2-like
TrEMBLA0A2U1KL230.0A0A2U1KL23_ARTAN; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRINGPOPTR_0001s11400.11e-53(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-45bHLH family protein