PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan002662 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | WRKY | ||||||||||||
Protein Properties | Length: 319aa MW: 34695.1 Da PI: 10.3817 | ||||||||||||
Description | WRKY family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.2 | 5.3e-31 | 247 | 304 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYe+eHnh+ Aan002662 247 DDYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERALDDPTMLIVTYESEHNHS 304 99************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 9.0E-17 | 198 | 243 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 6.4E-33 | 234 | 304 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.274 | 240 | 306 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-26 | 242 | 304 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-37 | 245 | 305 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 247 | 303 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
XNMEELAVRE AGAAGLQSLE HLIGLLSTHH HRKPSYPTTT TTVDYTAVAD VAVNKFKKFI 60 SLLDRSSTGH ARFRRGPISQ NQIPIQKKST LTPVPSPANI PATAPSSTPS MIQEKVFAPA 120 SIQQRVVKSG SFERKDAPTA TINFAGAAVV ASPATSFMSS LTGDTDGLQP SMSSGFQITN 180 MSQVSSAGQP NASNSSFKRK CNSVDDSHTK CTNSSGRCHC TKKRKSRMKR IVRVPAISLK 240 MADIPPDDYS WRKYGQKPIK GSPHPRGYYK CSSLRGCPAR KHVERALDDP TMLIVTYESE 300 HNHSLNLKDS SATIIFESS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-20 | 243 | 305 | 15 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 1e-20 | 243 | 305 | 15 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023728458.1 | 1e-167 | probable WRKY transcription factor 7 | ||||
Swissprot | Q9STX0 | 4e-89 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A2U1N7K5 | 0.0 | A0A2U1N7K5_ARTAN; WRKY13 | ||||
STRING | XP_009604893.1 | 1e-131 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 4e-84 | WRKY DNA-binding protein 7 |