PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan001690

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

Nin-like

Protein Properties

Length: 419aa MW: 45713.9 Da PI: 6.8829

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41934086	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-456160993	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4.1e-29	207	258	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l+++F++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Aan001690 207 AEKSISLEVLQQHFAGSLKDAAKNLGVCPTTMKRICRQHGISRWPSRKINKV 258 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.461	197	278	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-26	211	258	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
XSFDGSCMGQ VCMSTTDVAF YVVDAHMWGF REACAEHHLQ KGQGVAGRAF ETRSSCFCEN 60 ITHFSKTEYP LVHYARLFGL VASFAICLRS SHTGDDDYIL EFFLPPNMVD CKDQQTMLGS 120 LLTSMKQHFR SLTVASGEEI GEDGRMVEII KASVNGDVID SGLQSIRLSE SVISNGGPLI 180 LKQNTSNGKL ETVEPTTKKS ERKRGKAEKS ISLEVLQQHF AGSLKDAAKN LGVCPTTMKR 240 ICRQHGISRW PSRKINKVKP LTYQAKTVNE SVQGGEGTFT IPSLQTTQIP RGVDSPSWPP 300 APNGSPTNQQ GSPGSKTYEP TTSPKNEQGP TNQTSGSREA STGSPNSPNS HRSCQESQPY 360 EVKAPNPAVE FFVSDALLAA PQNEEPFRGM LIEDAGSSHD LTNLCPVAEP LERYKNLLX

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

XSFDGSCMGQ VCMSTTDVAF YVVDAHMWGF REACAEHHLQ KGQGVAGRAF ETRSSCFCEN  60
ITHFSKTEYP LVHYARLFGL VASFAICLRS SHTGDDDYIL EFFLPPNMVD CKDQQTMLGS  120
LLTSMKQHFR SLTVASGEEI GEDGRMVEII KASVNGDVID SGLQSIRLSE SVISNGGPLI  180
LKQNTSNGKL ETVEPTTKKS ERKRGKAEKS ISLEVLQQHF AGSLKDAAKN LGVCPTTMKR  240
ICRQHGISRW PSRKINKVKP LTYQAKTVNE SVQGGEGTFT IPSLQTTQIP RGVDSPSWPP  300
APNGSPTNQQ GSPGSKTYEP TTSPKNEQGP TNQTSGSREA STGSPNSPNS HRSCQESQPY  360
EVKAPNPAVE FFVSDALLAA PQNEEPFRGM LIEDAGSSHD LTNLCPVAEP LERYKNLLX

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021972605.1	0.0	protein NLP7-like isoform X2
Swissprot	Q84TH9	1e-117	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2U1NHW0	0.0	A0A2U1NHW0_ARTAN; NIN like protein 7
STRING	XP_009803234.1	1e-143	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-120	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]