PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan001133 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | NF-YB | ||||||||||||
Protein Properties | Length: 195aa MW: 20732.8 Da PI: 6.0068 | ||||||||||||
Description | NF-YB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 187 | 1.4e-58 | 15 | 110 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv+plkvyl+kyre+egek Aan001133 15 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDPLKVYLAKYREMEGEK 110 89********************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.2E-54 | 11 | 117 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.78E-41 | 17 | 119 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.5E-28 | 20 | 84 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.4E-20 | 48 | 66 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 51 | 67 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.4E-20 | 67 | 85 | No hit | No description |
PRINTS | PR00615 | 1.4E-20 | 86 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MADSDNEAGG ELSAREQDRF LPIANVSRIM KKALPANAKI SKDAKETVQE CVSEFISFIT 60 GEASDKCQRE KRKTINGDDL LWAMTTLGFE EYVDPLKVYL AKYREMEGEK TIGRQGENDG 120 SSGGGGGANP GGYNDGGGMY GGMXNNMVMG RTQHQMYNSN PGSYQQMSLG SPKGGLGRSG 180 SFGGGSGGSS TVKPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-49 | 9 | 105 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.1663 | 0.0 | leaf| trichome |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023752129.1 | 2e-93 | nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | O23310 | 4e-71 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A2U1PUT3 | 1e-139 | A0A2U1PUT3_ARTAN; NF-Y protein | ||||
STRING | VIT_19s0015g00440.t01 | 2e-82 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 6e-72 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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