PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan000903
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family WRKY
Protein Properties Length: 314aa    MW: 34602.8 Da    PI: 7.4966
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41954805PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-38370PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.5e-33110168159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d k v++tYeg+Hnh+
  Aan000903 110 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCTVRKHVERASHDLKSVITTYEGKHNHD 168
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-3795170IPR003657WRKY domain
SuperFamilySSF1182904.58E-29102170IPR003657WRKY domain
PROSITE profilePS5081138.503105170IPR003657WRKY domain
SMARTSM007741.7E-37110169IPR003657WRKY domain
PfamPF031062.5E-25111168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
XSSMQHKGSN NWGQESNLEV TSSGLIMQRQ NSGQFESSDA VDGSTTFSND EEEDDRATHG  60
SVSLGYDGEG DESESKRRKV EAYAADVTGA TRAIREPRVV VQTTSEVDIL DDGYRWRKYG  120
QKVVKGNPNP RSYYKCTSTG CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARNSSHANN  180
NNNNHTMAAQ TLSMQSQLHM PEPSRMQNNM ARFQRPPYGL PGGQHMGTNQ SHGYGYAMNQ  240
QRPGGLAQMA MANQVQQHMG PTPTHGYGYA MNQHLGFMVP KGEPKVEPMS DPGLNLANGA  300
TLYQQMTNRL PLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-39101171878Probable WRKY transcription factor 4
2lex_A7e-39101171878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024966449.11e-167probable WRKY transcription factor 34 isoform X1
RefseqXP_024966450.11e-167probable WRKY transcription factor 34 isoform X1
RefseqXP_024966452.11e-167probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG772e-81WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A059PY020.0A0A059PY02_ARTAN; WRKY2 transcription factor
STRINGXP_008246415.11e-133(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-80WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]