PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan000574

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

NF-YC

Protein Properties

Length: 411aa MW: 45189.5 Da PI: 4.7522

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41944234	PU_unref	Unigene	View CDS
gnl\|UG\|Aan#S55038024	PU_ref	Unigene	View CDS
PUT-183a-Artemisia_annua-11596	PU_unref	plantGDB	View CDS
PUT-183a-Artemisia_annua-162160993	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.9	9.8e-56	83	186	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivp Aan000574 83 QLQNFWANQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 182 89****9999************************************************************************************** PP NF-YC 98 rdel 101 r++l Aan000574 183 REDL 186 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.68E-33	74	177	IPR009072	Histone-fold
Pfam	PF00808	3.4E-21	105	168	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.3E-37	106	183	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MDQQGHGQAS GMGAVGSSAQ MPYNMASYPP NQTSAVIVPP ASVGGSVPPS QTSGLTSPPA 60 QLAQQQLAYQ HIHQQQQQQL HQQLQNFWAN QYQEIEQTTD FKNHSLPLAR IKKIMKADED 120 VRMISAEAPV IFARACEMFI LELTLRSWNH TEENKRRTLQ KNDIAAAITR TDIFDFLVDI 180 VPREDLKDEI IASTVLRGGP LPVGAPTEGL PISXMPPPQV GASGMYMGKP VDPQALYGQQ 240 PRPYMAQPMW PQQQQQEPQE DAKQGSNPED GGCRRVLTSG ICIKVQFACG YXGMLVVILN 300 YVFXVYMLFN DVGGERVLYL DLVLENLNSY PMQKEGGCSF DGNKLADTKK VDMEGXGKGY 360 HDDDGYYKGG DGGYGDDGGY DGGYDGGYDG GYGSYDGRHE GYEGRHKGYY G

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MDQQGHGQAS GMGAVGSSAQ MPYNMASYPP NQTSAVIVPP ASVGGSVPPS QTSGLTSPPA  60
QLAQQQLAYQ HIHQQQQQQL HQQLQNFWAN QYQEIEQTTD FKNHSLPLAR IKKIMKADED  120
VRMISAEAPV IFARACEMFI LELTLRSWNH TEENKRRTLQ KNDIAAAITR TDIFDFLVDI  180
VPREDLKDEI IASTVLRGGP LPVGAPTEGL PISXMPPPQV GASGMYMGKP VDPQALYGQQ  240
PRPYMAQPMW PQQQQQEPQE DAKQGSNPED GGCRRVLTSG ICIKVQFACG YXGMLVVILN  300
YVFXVYMLFN DVGGERVLYL DLVLENLNSY PMQKEGGCSF DGNKLADTKK VDMEGXGKGY  360
HDDDGYYKGG DGGYGDDGGY DGGYDGGYDG GYGSYDGRHE GYEGRHKGYY G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-60	91	183	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	161	RRTLQKN

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021996953.1	1e-140	nuclear transcription factor Y subunit C-3-like
Swissprot	Q9ZVL3	1e-75	NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBL	A0A2U1N775	1e-149	A0A2U1N775_ARTAN; NF-Y protein
STRING	EOY05563	1e-113	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	6e-75	nuclear factor Y, subunit C3

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant, 2017. 10(4): p. 645-648 [PMID:27871811] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714]