PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK45149.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

MYB

Protein Properties

Length: 143aa MW: 15996.8 Da PI: 6.9379

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK45149.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.1	1.1e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W++ ++ ++R++k+c++rw +yl KFK45149.1 14 KGPWTPEEDQKLIDYIHKHGHGSWRALPKLADLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	31.1	5.5e-10	67	98	1	34
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34 rg+++teE++ +++++ lG++ W++Ia +++ g KFK45149.1 67 RGKFSTEEEQTILHLHSILGNK-WSAIATHLQ-G 98 89******************.******9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.01	9	65	IPR017930	Myb domain
SMART	SM00717	1.9E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-18	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.77E-27	15	92	IPR009057	Homeodomain-like
CDD	cd00167	2.76E-12	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.7E-15	65	98	IPR009057	Homeodomain-like
PROSITE profile	PS51294	7.913	66	109	IPR017930	Myb domain
SMART	SM00717	1.5	66	102	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-8	67	98	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLIDYIH KHGHGSWRAL PKLADLNRCG KSCRLRWTNY 60 LRPDIKRGKF STEEEQTILH LHSILGNKWS AIATHLQGHH NPNDAPPSLP ADASSSSSYG 120 GGDGASLYWP DFCFDENIIN DIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-20	12	98	5	90	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK45149.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519560	1e-120	AY519560.1 Arabidopsis thaliana MYB transcription factor (At1g34670) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013659543.1	4e-67	transcription factor MYB41-like
Refseq	XP_013674792.1	4e-67	transcription factor MYB41-like
Swissprot	Q9S9Z2	1e-67	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A087HSP7	1e-102	A0A087HSP7_ARAAL; Uncharacterized protein
STRING	A0A087HSP7	1e-103	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-69	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]