PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK45003.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

SRS

Protein Properties

Length: 327aa MW: 36409.9 Da PI: 9.2617

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK45003.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	27.3	1e-08	28	102	5	78
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrel 78 + +C +CGn a+ C ++ C+ CC + C hv t v++a + + ++ ++ ++ ++ ++ + + r+l KFK45003.1 28 KPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLKTAVSSAEKAQAPSTPSSDQKA--SEGtpgTTTRVSSIRQL 102 568**************************************99877643333332222..22223322333333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-6	30	103	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MAASSPSLTN NGLSSAVTPP KTLRGLNKPK CIQCGNVARS RCPFQSCKGC CSRAENPCPI 60 HVLKTAVSSA EKAQAPSTPS SDQKASEGTP GTTTRVSSIR QLSSNFAQFN NLNAASRQRK 120 PLTIKDAQAL NEWRFTKLKE YRDRNIEVEN EAFDRYMSNV NLLEEAFSLT SVPEEDSAAA 180 DYEHNEEERT ASELKLRLRS NSEKTESFKK RLRETVKAGL VKLQRPRFGS NSKDPDDIER 240 RIKRGKWKEK TSAVSEIIDK LNKSRTEEDL KSCLEMKSKL YAQGSSNAAA EKNNNLPGVV 300 QKVEISEETL QRIGEDLLHS VDKVETL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK45003.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415156.1	0.0	uncharacterized protein LOC18991770
TrEMBL	A0A087HSA1	0.0	A0A087HSA1_ARAAL; Uncharacterized protein
STRING	A0A087HSA1	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7362	13	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	0.0