PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44896.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 444aa    MW: 49948.8 Da    PI: 6.7951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44896.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000143353681553
                 HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
         HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                 ++++++ +L++++ +      +K + a++L++A+ YI+ 
  KFK44896.1 335 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 368
                 7899999999999998.....8***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.975320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.69E-4334374No hitNo description
SuperFamilySSF474594.97E-9334385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-7335377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MIREECTPSS SWWEDVQHHH NDHANSLSST SFYQKNSNGN NHNHANANAN ASSEVEDNLS  60
ISTLNASHRL DLTAESSNHH SLSARNQPTS SSDELLRDHV VSSHNHLWSL AFLPGGRSIG  120
DQMMNQHHIT SSRNSSTTSE LPFEPPCDNG NGWIYDTNQV RYDQNSEQRL SKLSDLVGKH  180
WSIAPPNNLD INHNINLHHH QHNHFEQDSQ TNDDVSMYRQ AMEVKNEEDL CYNNGLSGGG  240
SLFQDPIESS TSFLDIRLSR PLSDINPSFK PCFKASNLSE FNKKEHQTAS LASVRLGTTN  300
AGKKKRCEEN SDEVSKKAKC GGGSISPEKE LPKAKLRDKI TTLQQIVSPF GKTDTASVLQ  360
EAITYINFYQ EQVKLLSTPY MKNSSIKDPW GGWEREDHNK RGAKHLDLKT RGLCLVPISY  420
TPVAYRDNSA TDYWSPSYRG SLYR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44896.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0001073e-47AC000107.2 Genomic sequence for Arabidopsis thaliana BAC F17F8 from chromosome I, complete sequence.
GenBankBT0115913e-47BT011591.1 Arabidopsis thaliana At1g31060 mRNA, complete cds.
GenBankBT0122333e-47BT012233.1 Arabidopsis thaliana At1g31060 gene, complete cds.
GenBankCP0026843e-47CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174391.50.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9FYJ60.0BH111_ARATH; Transcription factor bHLH111
TrEMBLA0A087HRZ40.0A0A087HRZ4_ARAAL; Uncharacterized protein
STRINGA0A087HRZ40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80551923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.10.0bHLH family protein