PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44872.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 280aa    MW: 32379.7 Da    PI: 5.4015
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44872.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.3e-08160204655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++ r+RR+ri ++ +eL +l+P +     +K + ae+ + A +Y+k Lq
  KFK44872.1 160 SIAARKRRRRITEKTQELGKLIPGS-----QKHNTAEMFQAAAKYVKFLQ 204
                 6788*******************98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-11152218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.805154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-10157217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-9160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5160204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00106168207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MIQLQDCFIP DLDIILPETD TFFFEPQHQN QTLPYNEALS PSIFGFDHFD SFYNPFLPPQ  60
ETFVPNPSLK TEEVFNESLQ DLDSFFNTPK HQKLTDSSFH FNTTHQDSLF TNPNPNLLDS  120
YTTEASNFSS EFRVPDLTPA FHVGWSDQDK TKKQVLSSQS IAARKRRRRI TEKTQELGKL  180
IPGSQKHNTA EMFQAAAKYV KFLQAQIGIL QLKQTKMQTY ESPKVEREMQ VLLASKEIQE  240
MLSTEEVCVV PREMVQALKT EECIFRSPKI SRDINKLLMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163167RKRRR
2164169KRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44872.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415438.21e-137transcription factor bHLH52 isoform X1
SwissprotQ9SA821e-118BH052_ARATH; Transcription factor bHLH52
TrEMBLA0A087HRX00.0A0A087HRX0_ARAAL; Uncharacterized protein
STRINGA0A087HRX00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-120bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]