PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44582.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Dof
Protein Properties Length: 366aa    MW: 41315.6 Da    PI: 7.1903
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44582.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.33e-3799158261
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                 ++k+l+cprC+s +tkfCyynny+++qPr+fC++C+ryWt GG++r vPvG+grrknk +
  KFK44582.1  99 PDKILPCPRCNSLDTKFCYYNNYNVNQPRHFCRNCQRYWTSGGSMRTVPVGSGRRKNKGW 158
                 7899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2899156IPR003851Zinc finger, Dof-type
PfamPF027018.1E-31101156IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.286103157IPR003851Zinc finger, Dof-type
PROSITE patternPS013610105141IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSQVRSETAV KVFGWTITSV YHDPLSPSSS SSSSSSLEPH MIKNQSDTDH SEEVDNTRLK  60
ISSDLTKESK ETSENSDDQH SEITTTTSSE EKTTTLKKPD KILPCPRCNS LDTKFCYYNN  120
YNVNQPRHFC RNCQRYWTSG GSMRTVPVGS GRRKNKGWVS SDPYLHIASD NTSDDYTNSS  180
STKILSFESS ESFVTENGTN NRPSDAKITA DSVSQDFNNF EGFLPPQVTS PVSPLWPYQY  240
PPNPSFYHMP VSWVPGWCTQ ESSTCLGKRT RDEASNETVR ESKDGFVRAR LVSESQSIIN  300
EASLATKNHV WYPVPMKREK AEKFSFFMKG SETMSNNNKR FVPQTYLSLQ ANPAAMARSM  360
NFRESM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44582.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174001.21e-180Dof-type zinc finger DNA-binding family protein
SwissprotQ9LQX40.0DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBLA0A087HR300.0A0A087HR30_ARAAL; Dof zinc finger protein
STRINGA0A087HR300.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140821624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26790.11e-159Dof family protein