PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44548.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 308aa    MW: 34821.3 Da    PI: 8.6885
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44548.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.45.1e-31180235156
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 k+r++W++eLH+rF++a+++LGGs++AtPk+i ++mkv+gLt+++vkSHLQkYRl+
  KFK44548.1 180 KQRRCWSSELHRRFLHALHHLGGSHVATPKQIIDFMKVDGLTNDEVKSHLQKYRLH 235
                 79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.844177237IPR017930Myb domain
SuperFamilySSF466891.88E-17178238IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-27178238IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-26180235IPR006447Myb domain, plants
PfamPF002496.5E-6182233IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDTQRCHQFV VALEEEQKKI HAFQRELPLC LQLVTLAIES CRKELEQIHG QSECSVQTTS  60
ECGAVFEEFI PINKWSSSSS FNKDGAEKIS EDKVDKTKPD WLRSTQLWNQ SPDPQPKEDQ  120
AMTTVLELKR KGGAFQPFHK EKYVAAKADS QPLKAISPTT TWSSTAESDG GKQQKQSHRK  180
QRRCWSSELH RRFLHALHHL GGSHVATPKQ IIDFMKVDGL TNDEVKSHLQ KYRLHTRRPA  240
TPVVTNGGEN QQQPQFMMVE GIWLPLQDAA NNRVYAPVAV QPGDRSSLRC KSHATSSSTH  300
TPHVLPLS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44548.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499096.11e-133PREDICTED: myb family transcription factor EFM-like
SwissprotQ9FPE81e-129HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A087HQZ60.0A0A087HQZ6_ARAAL; Uncharacterized protein
STRINGA0A087HQZ60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34912863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-113G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]