PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK44530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 25355.5 Da PI: 6.522 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.3 | 1.6e-09 | 115 | 162 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + k + a +L ++Y++sLq KFK44530.1 115 SHSLAERVRREKINDRLRSLQDLVPGC----YKAMGMAVMLDVIIDYVRSLQ 162 8*************************8....345888999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-16 | 109 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.15E-11 | 109 | 166 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-16 | 111 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.739 | 111 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-6 | 115 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-9 | 117 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:2000488 | Biological Process | positive regulation of brassinosteroid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MARFEPYKYN VDLNPLLAQF NQNPELINLD LPGSTPSSFM LFSNGALVDS HHNSSHFSPN 60 LLHGDSGRKG KREESGSKRK RKRLDEEEAM NIEDGIQKTR DVVHVRAKRG QATDSHSLAE 120 RVRREKINDR LRSLQDLVPG CYKAMGMAVM LDVIIDYVRS LQNQIEFLSM KLSAASAYYD 180 LNSLDIEPTD MFQGGNTYSA EEMERILRES VGTQPPNFSS TFPI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 83 | RKGKREESGSKRKRKRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK44530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK175757 | 0.0 | AK175757.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH075), complete cds, clone: RAFL22-31-M12. | |||
GenBank | AY088885 | 0.0 | AY088885.1 Arabidopsis thaliana clone 98716 mRNA, complete sequence. | |||
GenBank | DQ446289 | 0.0 | DQ446289.1 Arabidopsis thaliana clone pENTR221-At1g25330 basic helix-loop-helix family protein (At1g25330) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009109880.1 | 1e-134 | PREDICTED: transcription factor bHLH75 | ||||
Swissprot | A4D998 | 1e-126 | BH075_ARATH; Transcription factor bHLH75 | ||||
TrEMBL | A0A087HQX8 | 1e-165 | A0A087HQX8_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HQX7 | 1e-164 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25330.1 | 1e-121 | bHLH family protein |
Publications ? help Back to Top | |||
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