PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44529.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 227aa    MW: 25686.9 Da    PI: 6.2548
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44529.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09118165455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++iN+++  L++l+P +     k +  a +L   ++Y++sLq
  KFK44529.1 118 SHSLAERVRREKINDRLRSLQDLVPGC----YKAMGMAVMLDVIIDYVRSLQ 165
                 8*************************8....345888999999999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.29E-11112169No hitNo description
SuperFamilySSF474591.44E-16112181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.739114164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16114176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6118165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-9120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MARFEPYKYN VDLNPLLAQF NQNPELINLD LPGSTPSSFM LFSNGALVDS HHNSSHFSPN  60
LLHEMAGDSG RKGKREESGS KRKRKRLDEE EAMNIEDGIQ KTRDVVHVRA KRGQATDSHS  120
LAERVRREKI NDRLRSLQDL VPGCYKAMGM AVMLDVIIDY VRSLQNQIEF LSMKLSAASA  180
YYDLNSLDIE PTDMFQGGNT YSAEEMERIL RESVGTQPPN FSSTFPI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17086RKGKREESGSKRKRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44529.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1757570.0AK175757.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH075), complete cds, clone: RAFL22-31-M12.
GenBankAY0888850.0AY088885.1 Arabidopsis thaliana clone 98716 mRNA, complete sequence.
GenBankDQ4462890.0DQ446289.1 Arabidopsis thaliana clone pENTR221-At1g25330 basic helix-loop-helix family protein (At1g25330) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109880.11e-132PREDICTED: transcription factor bHLH75
SwissprotA4D9981e-124BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A087HQX71e-168A0A087HQX7_ARAAL; Uncharacterized protein
STRINGA0A087HQX71e-169(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140812024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-119bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]