PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44510.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 285aa    MW: 32941.9 Da    PI: 7.0857
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44510.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-162067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll +++   G g+W++ a+  g++Rt+k+c++rw++yl
       KFK44510.1 20 KGPWTLEEDTLLTNYISHNGEGRWNLLAKFSGLKRTGKSCRLRWLNYL 67
                     79********************************************97 PP
2Myb_DNA-binding49.69.1e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ +Rt++++k++w++
       KFK44510.1  73 RGNLTPQEQLLILELHSKWGNR-WSKIAQYLP-RRTDNEIKNYWRT 116
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2951567IPR017930Myb domain
SuperFamilySSF466891.55E-2918114IPR009057Homeodomain-like
SMARTSM007177.0E-141969IPR001005SANT/Myb domain
PfamPF002492.0E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-222174IPR009057Homeodomain-like
CDDcd001676.98E-102267No hitNo description
PROSITE profilePS5129424.93468122IPR017930Myb domain
SMARTSM007173.6E-1472120IPR001005SANT/Myb domain
PfamPF002495.9E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2275121IPR009057Homeodomain-like
CDDcd001671.07E-1077116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSNIMKKRSN GNEKGGDQRK GPWTLEEDTL LTNYISHNGE GRWNLLAKFS GLKRTGKSCR  60
LRWLNYLKPD IKRGNLTPQE QLLILELHSK WGNRWSKIAQ YLPRRTDNEI KNYWRTRVQK  120
QARQLNIDSN SHKFLEAVRS LWVPRLIHKM KDNSNTNTTK ASPPDSLVAV LRDKDVSHES  180
GYNNIDCSTS MSQDLHKFMD LSDLETTCSL NFDGSQGTSS QCVSEDYSSF PCLEGEYMVA  240
TMGNSDILQM QDCYMAGSTY EEDVTQDPMW NMDDIWQFKE YAYSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23171224108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44510.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867831.11e-170transcription factor MYB62
SwissprotQ9C9G71e-106MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A087HQV80.0A0A087HQV8_ARAAL; Uncharacterized protein
STRINGA0A087HQV80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-164myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]